Research Areas

At the College of Engineering of Koç University we perform research at the frontiers of science and technology with an inter-disciplinary perspective. While our research focus is on engineering design, our projects are frequently multi-disciplinary and are usually at the interface with physical sciences, mathematics, life sciences, and business administration.

Our main research areas as follows. Please follow links to faculty members’ web pages for more information

Multimedia, vision and graphics – Yücel Yemez, Engin Erzin, Metin Sezgin, Murat Tekalp

Networks, Distributed and Parallel Systems – Öznur Özkasap, Attila Gürsoy, Didem Unat

Artificial Intelligence, Machine Learning – Deniz Yüret, Yücel Yemez, Metin Sezgin, Barış Akgün, Mehmet Gönen

Bioinformatics – Özlem Keskin, Attila Gürsoy, Mehmet Gönen, Metin Türkay, Ceyda Oğuz

Cryptography and Security – Alptekin Küpçü

Mechatronics and Robotics – İsmail Lazoğlu, Çağatay Başdoğan, Barış Akgün

Signal Processing and Telecommunications – Murat Tekalp, Özgür Barış Akan, Alper Erdoğan, Alper Demir, Sinem Çöleri Ergen, Engin Erzin

Electromagnetics, optics, photonics – Umran İnan, İrşadi Aksun, Hakan Ürey, Alphan Sennaroğlu, Alper Kiraz, Ekin Kocabaş, Sedat Nizamoğlu, Cengiz Onbaşlı

Electronics, micro and nanotechologies – Hakan Ürey, Alper Demir, Cengiz Onbaşlı, Ekin Kocabaş, Sedat Nizamoğlu

Supply Chain and Logistics Management – Metin Türkay, Ceyda Oğuz, Fikri Karaesmen, Emre Alper Yıldırım, Barış Yıldız

Service Operations – Lerzan Örmeci, Pelin Canbolat, Athanasia Manou

Optimization Methods – Metin Türkay, Ceyda Oğuz, Emre Alper Yıldırım, Sibel Salman, Gabor Rudolf, Barış Yıldız

Stochastic Processes and Models – Süleyman Özekici, Fikri Karaesmen, Lerzan Örmeci, Pelin Canbolat, Gabor Rudolf, Athanasia Manou

Financial Engineering – Süleyman Özekici, Fikri Karaesmen, Gabor Rudolf

Process systems – Yaman Arkun, Can Erkey

Environmental and Energy Engineering – Can Erkey, Seda Keskin, Alper Uzun

Molecular Engineering – Burak Erman, Seda Kızılel, Mehmet Sayar, Cem Albayrak

Materials Engineering – Seda Keskin, Erdem Alaca, Demircan Canadinç, Murat Sözer, Mehmet Sayar

Biotechnology – Halil Kavaklı, Cem Albayrak

Aerospace Engineering – Arif Karabeyoğlu

Mechanical Design – İsmail Lazoğlu, Erdem Alaca, Murat Sözer

Fluid Mechanics – Metin Muradoğlu, Kerem Pekkan, Arif Karabeyoğlu

Computational Biology – Burak Erman, Özlem Keskin, Attila Gürsoy, Mehmet Sayar, Metin Türkay, Ceyda Oğuz

Biomedical Applications – İsmail Lazoğlu, Hakan Ürey, Kerem Pekkan, Demircan Canadinç, Sedat Nizamoğlu

Research in Computer Engineering Multimedia, Graphics and Vision, Networks, Distributed and Parallel Systems, Software Engineering, Artificial Intelligence, Bioinformatics, Cryptography and security

Research in Electrical and Electronics Engineering Digital Communications, Signal Processing, Multimedia Networks, Electronic Systems, Photonics and Electromagnetics

Researh in Industrial Engineering Supply Chain and Logistics Management, Service Operations, Applied Operations Research, Financial Engineering

Research in Chemical and Biological Engineering Process Systems, Energy and Environment, Molecular Engineering, Materials Engineering, Biotechnology

Research in Mechanical Engineering Mechatronics and robotics, Materials and Manufacturing, Aerospace, Mechanical Design, Fluid Mechanics

Research in Interdisciplinary Grad Programs Bio-Medical Sciences and Engineering,  Computational Science and Engineering, Materials Science and Engineering, Optoelectronic and Photonic Engineering

Recent Books by CE Faculty

Murat Tekalp, Digital Video Processing 2nd edition, Prentice Hall, 2015

Umran S. Inan and A. İnan, Engineering Electromagnetics and Waves 2nd edition, Pearson, 2014

Recent Journal Publications of CE Faculty

2015 Publications

Muratcioglu, S., Chavan, T.S., Freed, B.C., Jang, H., Khavrutskii, L., Natasha Freed, R., Dyba, M.A., Stefanisko, K., Tarasov, S.G., Gursoy, A., Keskin, O., Tarasova, N.I., Gaponenko, V., Nussinov, R., GTP-Dependent K-Ras Dimerization, Structure, Volume 23, pp 1325-1335, 2015, DOI 10.1016/j.str.2015.04.019

Basdogan, Y., Keskin, S., Simulation and modelling of MOFs for hydrogen storage, CrystEngComm, Volume 17, pp 261-275, 2015, 10.1039/c4ce01711k

Akhtar, N., Ergen, S.C., Ozkasap, O., Vehicle mobility and communication channel models for realistic and efficient highway VANET simulation, IEEE Transactions on Vehicular Technology, Volume 64, pp 248-262, 2015, DOI 10.1109/TVT.2014.2319107

Cakmak, O., Ermek, E., Kilinc, N., Bulut, S., Baris, I., Kavakli, I.H., Yaralioglu, G.G., Urey, H., A cartridge based sensor array platform for multiple coagulation measurements from plasma, Lab on a Chip – Miniaturisation for Chemistry and Biology, Volume 15, pp 113-120, 2015, DOI 10.1039/c4lc00809j

Cakmak, O., Ermek, E., Kilinc, N., Yaralioglu, G.G., Urey, H., Precision density and viscosity measurement using two cantilevers with different widths, Sensors and Actuators, A: Physical, Volume 232, pp 141-147, 2015, DOI 10.1016/j.sna.2015.05.024

Özoğuz, A., Uyan, T., Birdal, G., Iskender, C., Kartal, E., Lahut, S., Ömür, T., Agim, Z.S., Eken, A.G., Sen, N.E., Kavak, P., Saygi, C., Sapp, P.C., Keagle, P., Parman, Y., Tan, E., Koç, F., Deymeer, F., Oflazer, P., Hanağasi, H., Gürvit, H., Bilgiç, B., Durmuş, H., Ertaş, M., Kotan, D., Akalin, M.A., Güllüoğlu, H., Zarifoğlu, M., Aysal, F., Döşoğlu, N., Bilguvar, K., Günel, M., Keskin, T., Akgün, T., Özçelik, H., Landers, J.E., Brown, R.H., Başak, A.N., The distinct genetic pattern of ALS in Turkey and novel mutations, Neurobiology of Aging, Volume 36, pp 1764.e9-1764.e18, 2015, DOI 10.1016/j.neurobiolaging.2014.12.032

Sezginel, K.B., Uzun, A., Keskin, S., Multivariable linear models of structural parameters to predict methane uptake in metal-organic frameworks, Chemical Engineering Science, Volume 124, pp 125-134, DOI 10.1016/j.ces.2014.10.034

Özbakir, Y., Erkey, C., Experimental and theoretical investigation of supercritical drying of silica alcogels, Journal of Supercritical Fluids, Volume 98, pp 153-166, 2015, DOI 10.1016/j.supflu.2014.12.001

Shah, G.A., Akan, O.B., Cognitive adaptive medium access control in cognitive radio sensor networks, IEEE Transactions on Vehicular Technology, Volume 64, pp 757-767, DOI 10.1109/TVT.2014.2324617

Erucar, I., Keskin, S., Computational Modeling of bio-MOFs for CO2/CH4 separations, Chemical Engineering Science, Volume 130, pp 120-128, 2015, DOI 10.1016/j.ces.2015.03.016

Cevik, O., Gidon, D., Kizilel, S., Visible-light-induced synthesis of pH-responsive composite hydrogels for controlled delivery of the anticonvulsant drug pregabalin, Acta Biomaterialia, Volume 11, pp 151-161, 2015, DOI 10.1016/j.actbio.2014.09.018

Akçay, A., Babucci, M., Balci, V., Uzun, A., A model to predict maximum tolerable temperatures of metal-oxide-supported 1-n-butyl-3-methylimidazolium based ionic liquids, Chemical Engineering Science, Volume 123, pp 588-595, 2015, DOI 10.1016/j.ces.2014.11.038

Çelik, A., Lazoglu, I., Kara, A., Kara, F., Investigation on the performance of SiAlON ceramic drills on aerospace grade CFRP composites, Journal of Materials Processing Technology, Volume 223, pp 39-47, 2015, DOI 10.1016/j.jmatprotec.2015.03.040

Salman, F.S., Yücel, E., Emergency facility location under random network damage: Insights from the Istanbul case, Computers and Operations Research, Volume 62, pp 266-281, 2015, DI 266-281

Guven-Maiorov, E., Keskin, O., Gursoy, A., VanWaes, C., Chen, Z., Tsai, C.-J., Nussinov, R., The Architecture of the TIR Domain Signalosome in the Toll-like Receptor-4 Signaling Pathway, Scientific Reports, Volume 5, 2015, DOI 10.1038/srep13128

Babucci, M., Akçay, A., Balci, V., Uzun, A., Thermal Stability Limits of Imidazolium Ionic Liquids Immobilized on Metal-Oxides, Langmuir, Volume 31, pp 9163-9176, 2015, DOI 10.1021/acs.langmuir.5b02519

Guven-Maiorov, E., Keskin, O., Gursoy, A., Nussinov, R., A Structural View of Negative Regulation of the Toll-like Receptor-Mediated Inflammatory Pathway, Biophysical Journal, Volume 109, pp 1214-1220, 2015, DOI 10.1016/j.bpj.2015.06.048

Muratcioglu, S., Presman, D.M., Pooley, J.R., Grøntved, L., Hager, G.L., Nussinov, R., Keskin, O., Gursoy, A., Structural Modeling of GR Interactions with the SWI/SNF Chromatin Remodeling Complex and C/EBP, Biophysical Journal, Volume 109, pp 1227-1239, 2015, DOI 10.1016/j.bpj.2015.06.044

Kade, D., Akşit, K., Ürey, H., Özcan, O., Head-mounted mixed reality projection display for games production and entertainment, Personal and Ubiquitous Computing, Volume 19, pp 509-521, 2015, DOI 10.1007/s00779-015-0847-y

Erbulut, D.U., Zafarparandeh, I., Hassan, C.R., Lazoglu, I., Ozer, A.F., Determination of the biomechanical effect of an interspinous process device on implanted and adjacent lumbar spinal segments using a hybrid testing protocol: A finite-element study, Journal of Neurosurgery: Spine, Volume 23, pp 200-208, 2015, DOI 10.3171/2014.12.SPINE14419

Kuscu, M., Kiraz, A., Akan, O.B., Fluorescent Molecules as Transceiver Nanoantennas: The First Practical and High-Rate Information Transfer over a Nanoscale Communication Channel based on FRET, Scientific Reports, Volume 5, 2015, DOI 10.1038/srep07831

Dinc, E., Akan, O.B., Fading correlation analysis in MIMO-OFDM troposcatter communications: Space, frequency, angle and space-frequency diversity, IEEE Transactions on Communications, Volume 63, pp 476-486, 2015, DOI 10.1109/TCOMM.2014.2387159

Bal, B., Gumus, B., Gerstein, G., Canadinc, D., Maier, H.J., On the micro-deformation mechanisms active in high-manganese austenitic steels under impact loading, Materials Science and Engineering A, Volume 632, pp 29-34, 2015, DOI 10.1016/j.msea.2015.02.054

Adiyan, U., Çivitçi, F., Ferhanoʇlu, O., Torun, H., Urey, H., A 35-μm pitch IR thermo-mechanical MEMS sensor with AC-coupled optical readout, IEEE Journal on Selected Topics in Quantum Electronics, Volume 21, 2015, DOI 10.1109/JSTQE.2014.2384503

Mamedov, A., Layegh K, S.E., Lazoglu, I., Instantaneous tool deflection model for micro milling, International Journal of Advanced Manufacturing Technology, Volume 79, pp 769-777, 2015, DOI 10.1007/s00170-015-6877-9

Dinc, E., Akan, O.B., Channel model for the surface ducts: Large-scale path-loss, delay spread, and AOA, IEEE Transactions on Antennas and Propagation, Volume 63, pp 2728-2738, 2015, DOI 10.1109/TAP.2015.2418788

Izbassarov, D., Muradoglu, M., A front-tracking method for computational modeling of viscoelastic two-phase flow systems, Journal of Non-Newtonian Fluid Mechanics, Volume 223, pp 122-140, 2015, DOI 10.1016/j.jnnfm.2015.05.012

Yigit, M.B., Kowalski, W.J., Hutchon, D.J.R., Pekkan, K., Transition from fetal to neonatal circulation: Modeling the effect of umbilical cord clamping, Journal of Biomechanics, Volume 48, pp 1662-1670, 2015, DOI 10.1016/j.jbiomech.2015.02.040

Yilmaz, G., Ozcan, A., Keskin, S., Computational screening of ZIFs for CO<inf>2</inf> separations, Molecular Simulation, Volume 41, pp 713-726, 2015, DOI 10.1080/08927022.2014.923568

Flaherty, D.W., Uzun, A., Iglesia, E., Catalytic ring opening of cycloalkanes on Ir clusters: Alkyl substitution effects on the structure and stability of C-C bond cleavage transition states, Journal of Physical Chemistry C, Volume 119, pp 2597-2613, 2015, DOI 10.1021/jp511688x

Basdogan, Y., Sezginel, K.B., Keskin, S., Identifying Highly Selective Metal Organic Frameworks for CH<inf>4</inf>/H<inf>2</inf> Separations Using Computational Tools, Industrial and Engineering Chemistry Research, Volume 54, pp 8479-8491, 2015, DOI 10.1021/acs.iecr.5b01901

Li, J.D., Harid, V., Spasojevic, M., Gołkowski, M., Inan, U.S., Preferential amplification of rising versus falling frequency whistler mode signals, Geophysical Research Letters, Volume 42, pp 207-214, 2015, DOI 10.1002/2014GL062359

Kulkarni, P., Gołkowski, M., Inan, U.S., Bell, T.F., The effect of electron and ion temperature on the refractive index surface of 1-10 kHz whistler mode waves in the inner magnetosphere, Journal of Geophysical Research A: Space Physics, Volume 120, pp 581-591, 2015, DOI 10.1002/2014JA020669

Kilinc, D., Ozger, M., Akan, O.B., On the Maximum Coverage Area of Wireless Networked Control Systems with Maximum Cost-Efficiency under Convergence Constraint, IEEE Transactions on Automatic Control, Volume 60, pp 1910-1914, 2015, DOI 10.1109/TAC.2014.2366611

Inan, H.A., Erdogan, A.T., Convolutive Bounded Component Analysis Algorithms for Independent and Dependent Source Separation, IEEE Transactions on Neural Networks and Learning Systems, Volume 26, pp 697-708, 2015, DOI 10.1109/TNNLS.2014.2320817

Layegh K., S.E., Yigit, I.E., Lazoglu, I., Analysis of tool orientation for 5-axis ball-end milling of flexible parts, CIRP Annals – Manufacturing Technology, Volume 64, pp 97-100, DOI 10.1016/j.cirp.2015.04.067

Çelik, A., Lazoglu, I., Kara, A., Kara, F., Wear on SiAlON ceramic tools in drilling of aerospace grade CFRP composites, Wear, Volume 338-339, 2015, DOI 10.1016/j.wear.2015.05.009

Kabirzadeh, R., Lehtinen, N.G., Inan, U.S., Latitudinal dependence of static mesospheric e fields above thunderstorms, Geophysical Research Letters, Volume 42, pp 4208-4215, 2015, DOI 10.1002/2015GL064042

Unat, D., Chan, C., Zhang, W., Williams, S., Bachan, J., Bell, J., Shalf, J., ExaSAT: An exascale co-design tool for performance modeling, International Journal of High Performance Computing Applications, Volume 29, pp 209-232, 2015, DOI 10.1177/1094342014568690

Fattahi, A., Turkay, M., ε-OA for the solution of bi-objective generalized disjunctive programming problems in the synthesis of nonlinear process networks, Computers and Chemical Engineering, Volume 72, pp 199-209, 2015, DOI 10.1016/j.compchemeng.2014.04.004

Çiʇ, Ç., Metin Sezgin, T., Gaze-based prediction of pen-based virtual interaction tasks, International Journal of Human Computer Studies, Volume 73, pp 91-106, 2015, DOI 10.1016/j.ijhcs.2014.09.005

Çekyay, B., Özekici, S., Reliability, MTTF and steady-state availability analysis of systems with exponential lifetimes, Applied Mathematical Modelling, Volume 39, pp 284-296, 2015, DOI 10.1016/j.apm.2014.05.029

Fattahi, A., Turkay, M., On the MILP model for the U-shaped assembly line balancing problems, European Journal of Operational Research, Volume 242, pp 343-346, 2015, DOI 10.1016/j-ejor.2014.10.036

Tan, B., Mathematical programming representations of the dynamics of continuous-flow production systems, IIE Transactions (Institute of Industrial Engineers), IIE Transactions (Institute of Industrial Engineers), Volume 47, pp 173-189, 2015, DOI 10.1080/0740817X.2014.892232

Bozbaʇ, S.E., Erkey, C., Supercritical deposition: Current status and perspectives for the preparation of supported metal nanostructures, Journal of Supercritical Fluids, Volume 96, pp 298-312, 2015, DOI 10.1016/j.supflu.2014.09.036

Mahmutoglu, A.G., Demir, A., Modeling and simulation of low-frequency noise in nano devices: Stochastically correct and carefully crafted numerical techniques, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, Volume 34, pp 794-807, 2015, DOI 10.1109/TCAD.2014.2376985

Resat, H.G., Turkay, M., Design and operation of intermodal transportation network in the Marmara region of Turkey, Transportation Research Part E: Logistics and Transportation Review, Volume 83, pp 16-33, 2015, DOI 10.1016/j.tre.2015.08.006

Altintas, C., Keskin, S., Molecular simulations of porous coordination network-based mixed matrix membranes for CO<inf>2</inf>/N<inf>2</inf> separations, Molecular Simulation, Volume 41, pp 1396-1408, 2015, DOI 10.1080/08927022.2015.1028933

Zoghzoghy, F.G., Cohen, M.B., Said, R.K., Lehtinen, N.G., Inan, U.S., Shipborne LF-VLF oceanic lightning observations and modeling, Journal of Geophysical Research: Atmospheres, Volume 120, pp 10890-10902, 2015, DOI 10.1002/2015JD023226

Nizamoglu, S., Lee, K.-B., Gather, M.C., Kim, K.S., Jeon, M., Kim, S., Humar, M., Yun, S.-H., A Simple Approach to Biological Single-Cell Lasers Via Intracellular Dyes, Advanced Optical Materials, Volume 3, pp 1197-1200, 2015, DOI 10.1002/adom.201500144

Aridogan, U., Basdogan, I., A review of active vibration and noise suppression of plate-like structures with piezoelectric transducers, Journal of Intelligent Material Systems and Structures, Volume 26, pp 1455-1476, 2015, DOI 10.1177/1045389X15585896

Piskin, S., Ündar, A., Pekkan, K., Computational Modeling of Neonatal Cardiopulmonary Bypass Hemodynamics With Full Circle of Willis Anatomy, Artificial Organs, Volume 39, pp E164-E175, 2015, DOI 10.1111/aor.12468

Akşin, O.Z., Çakan, N., Karaesmen, F., O¨rmeci, E.L., Flexibility Structure and Capacity Design with Human Resource Considerations, Production and Operations Management, Volume 24, pp 1086-1100, 2015, DOI 10.1111/poms.12333

Unal, G.S., Aksun, M.I., Bridging the gap between RF and optical patch antenna analysis via the cavity model, Scientific Reports, Volume 5, 2015, DOI 10.1038/srep15941

Shahraki, N., Cai, H., Turkay, M., Xu, M., Optimal locations of electric public charging stations using real world vehicle travel patterns, Transportation Research Part D: Transport and Environment, Volume 41, pp 165-176, 2015, DOI 10.1016/j.trd.2015.09.011

Bonnefous, O., Osman, J., Goubergrits, L., Pallares, J., Cito, S., Passalacqua, A., Piskin, S., Pekkan, K., Ramalho, S., Marques, N., Sanchi, S., Schumacher, K.R., et al, The Computational Fluid Dynamics Rupture Challenge 2013–Phase II: Variability of Hemodynamic Simulations in Two Intracranial Aneurysms, Journal of biomechanical Engineering, Volume 137, pp 121008-, 2015, DOI 10.1115/1.4031794

Ozcan, A., Keskin, S., Effects of molecular simulation parameters on predicting gas separation performance of ZIFs, Journal of Chemical Technology and Biotechnology, Volume 90, pp 1707-1718, 2015, DOI 10.1002/jctb.4482

Bozkurt, Y., Demir, A., Erman, B., Gül, A., Unified Modeling of Familial Mediterranean Fever and Cryopyrin Associated Periodic Syndromes, Computational and Mathematical Methods in Medicine, Volume 2015, 2015, DOI 10.1155/2015/893507

Sadi, Y., Coleri Ergen, S., Energy and delay constrained maximum adaptive schedule for wireless networked control systems, IEEE Transactions on Wireless Communications, Volume 14, pp 3738-3751, 2015, DOI 10.1109/TWC.2015.2411602

Inan, H.A., Erdogan, A.T., A convolutive bounded component analysis framework for potentially nonstationary independent and/or dependent sources, IEEE Transactions on Signal Processing, Volume 63, pp 18-30, 2015, DOI 10.1109/TSP.2014.2367472

Goktas, S., Chen, C.-Y., Kowalski, W.J., Pekkan, K., Hemodynamic flow visualization of early embryonic great vessels using μPIV, Methods in Molecular Biology, Volume 1189, pp 17-30, 2015, DOI 10.1007/978-1-4939-1164-6_2

Okyay, H.K., Karaesmen, F., Özekici, S., Hedging demand and supply risks in the newsvendor model, OR Spectrum, Volume 37, pp 475-501, 2015, DOI 10.1007/s00291-014-0385-4

Erman, B., Walpoth, B.N., Regulation of ryanodine receptor RyR2 by protein-protein interactions: Prediction of a PKA binding site on the N-terminal domain of RyR2 and its relation to disease causing mutations, F1000Research, Volume 4, 2015, DOI 10.12688/f1000research.5858.1

Aydin, E., Celebi, A.D., Sildir, H., Arkun, Y., Canan, U., Is, G., Erdogan, M., Dynamic modeling of an industrial diesel hydroprocessing plant by the method of continuous lumping, Computers and Chemical Engineering, Volume 82, pp 44-54, 2015, DOI 10.1016/j.compchemeng.2015.06.005

Antón, R., Chen, C.-Y., Hung, M.-Y., Finol, E.A., Pekkan, K., Experimental and computational investigation of the patient-specific abdominal aortic aneurysm pressure field, Computer Methods in Biomechanics and Biomedical Engineering, Volume 18, pp 981-992, 2015, DOI 10.1080/10255842.2013.865024

Güneş, E.D., Örmeci, E.L., Kunduzcu, D., Preventing and diagnosing colorectal cancer with a limited colonoscopy resource, Production and Operations Management, Volume 24, 2015, DOI 10.1111/poms.12206

Bozbaʇ, S.E., Gümüşoʇlu, T., Yilmaztürk, S., Ayala, C.J., Aindow, M., Deligöz, H., Erkey, C., Electrochemical performance of fuel cell catalysts prepared by supercritical deposition: Effect of different precursor conversion routes, Journal of Supercritical Fluids, Volume 97, pp 154-164, 2015, DOI 10.1016/j.supflu.2014.08.014

Erman, B., Effects of ligand binding upon flexibility of proteins, Proteins: Structure, Function and Bioinformatics, Volume 83, pp 805-808, 2015, DOI 10.1002/prot.24785

Lagershausen, S., Tan, B., On the exact inter-departure, inter-start, and cycle time distribution of closed queueing networks subject to blocking, IIE Transactions (Institute of Industrial Engineers), Volume 47, pp 673-692, 2015, DOI 10.1080/0740817X.2014.982841

Sildir, H., Arkun, Y., Canan, U., Celebi, S., Karani, U., Er, I., Dynamic modeling and optimization of an industrial fluid catalytic cracker, Journal of Process Control, Volume 31, pp 30-44, 2015, DOI 10.1016/j.jprocont.2015.04.002

Adatoz, E., Keskin, S., Application of MD simulations to predict membrane properties of MOFs, Journal of Nanomaterials, Volume 2015, 2015, DOI 10.1155/2015/136867

Dalgicdir, C., Globisch, C., Peter, C., Sayar, M., Tipping the Scale from Disorder to Alpha-helix: Folding of Amphiphilic Peptides in the Presence of Macroscopic and Molecular Interfaces, PLoS Computational Biology, Volume 11, 2015, DOI 10.1371/journal.pcbi.1004328

Yanik, E., Sezgin, T.M., Active learning for sketch recognition, Computers and Graphics (Pergamon), Volume 52, pp 93-105, 2015, DOI 10.1016/j.cag.2015.07.023

Sağol, G., Yıldırım, E.A., Analysis of copositive optimization based linear programming bounds on standard quadratic optimization, Journal of Global Optimization, Volume 63, pp 37-59, 2015, DOI 10.1007/s10898-015-0269-4

Dinc, E., Akan, O.B., A nonuniform spatial rain attenuation model for troposcatter communication links, IEEE Wireless Communications Letters, Volume 4, pp 441-444, 2015, 10.1109/LWC.2015.2433261

Esmaeelzadeh, V., Berangi, R., Hosseini, E.S., Akan, O.B., Stochastic backlog and delay bounds of generic rate-based AIMD congestion control scheme in cognitive radio sensor networks, Pervasive and Mobile Computing, Volume 22, pp 46-57, 2015, DOI 10.1016/j.pmcj.2015.02.005

Boz, U., Aridogan, U., Basdogan, I., A numerical and experimental study of optimal velocity feedback control for vibration suppression of a plate-like structure, Journal of Low Frequency Noise Vibration and Active Control, Volume 34, pp 343-360, 2015

Gumus, B., Bal, B., Gerstein, G., Canadinc, D., Maier, H.J., Guner, F., Elmadagli, M., Twinning activities in high-Mn austenitic steels under high-velocity compressive loading, Materials Science and Engineering A, Volume 648, pp 104-112, 2015, DOI 10.1016/j.msea.2015.09.045

Naithani, A., Taylor, P., Erman, B., Walkinshaw, M.D., A Molecular Dynamics Study of Allosteric Transitions in Leishmania mexicana Pyruvate Kinase, Biophysical Journal, Volume 109, pp 1149-1156, 2015, DOI 10.1016/j.bpj.2015.05.040

Li, J.D., Spasojevic, M., Inan, U.S., An empirical profile of VLF triggered emissions, Journal of Geophysical Research A: Space Physics, Volume 120, pp 6581-6595, 2015, DOI 10.1109/LCOMM.2015.2454494

Kontik, M., Ergen, S.C., Scheduling in Successive Interference Cancellation Based Wireless Ad Hoc Networks, IEEE Communications Letters, Volume 19, pp 1524-1527, 2015, DOI 10.1109/LCOMM.2015.2454494

Bicen, A.O., Pehlivanoglu, E.B., Galmes, S., Akan, O.B., Dedicated Radio Utilization for Spectrum Handoff and Efficiency in Cognitive Radio Networks, IEEE Transactions on Wireless Communications, Volume 14, pp 5251-5259, 2015, DOI 10.1109/TW.2013.060413.121073

Surman, P., Day, S., Liu, X., Benjamin, J., Urey, H., Aksit, K., Head tracked retroreflecting 3D display, Journal of the Society for Information Display, Volume 23, pp 56-68, 2015, DOI 10.1002/jsid.295

Giray Resat, H., Turkay, M., Transport and Logistics Models for Sustainability, Computer Aided Chemical Engineering, Volume 36, pp 401-420, 2015, DOI 10.1016/B978-0-444-63472-6.00016-1

Noyan, N., Rudolf, G., Kusuoka representations of coherent risk measures in general probability spaces, Annals of Operations Research, Volume 229, pp 591-605, 2015, DOI 10.1007/s10479-014-1748-6

Bingol, H.B., Altin, A., Bal, T., Agopcan-Cinar, S., Kizilel, S., Avci, D., Synthesis and evaluation of new phosphonic acid-functionalized acrylamides with potential biomedical applications, Journal of Polymer Science, Part A: Polymer Chemistry, Volume 53, pp 2755-2767, 2015, DOI 10.1002/pola.27746

Turkay, M., Turkey’s chemicals industry expands into global markets, Chemical Engineering Progress, Volume 111, pp 50-54, 2015

Bugdayci, B., Lazoglu, I., Temperature and wear analysis in milling of aerospace grade aluminum alloy Al-7050, Production Engineering, Volume 9, pp 487-494, 2015, DOI 10.1007/s11740-015-0623-x

Blackburn, E.A., Wear, M.A., Landre, V., Narayan, V., Ning, J., Erman, B., Ball, K.L., Walkinshaw, M.D., Cyclophilin40 isomerase activity is regulated by a temperature-dependent allosteric interaction with Hsp90, Bioscience Reports, Volume 35, 2015, DOI 10.1042/BSR20150124

Tan, B., Gershwin, S.B., Liberopoulos, G., Meerkov, S.M., Papadopoulos, C.T., Advances in stochastic models of manufacturing and service operations, Annals of Operations Research, Volume 231, 2015, DOI 10.1007/s10479-015-1868-7

Cavga, A.D., Karahan, N., Keskin, O., Gursoy, A., Taming oncogenic signaling at protein interfaces: Challenges and opportunities, Current Topics in Medicinal Chemistry, Volume 15, pp 2005-2018, 2015,

Onal, O., Bal, B., Canadinc, D., Akdari, E., Experimental and Numerical Evaluation of Thickness Reduction in Steel Plate Heat Exchangers, Journal of Engineering Materials and Technology, Transactions of the ASME, Volume 137, 2015, DOI 10.1115/1.4031080

Günay, G., Yeşilel, O.Z., Erer, H., Keskin, S., Tabak, A., A zinc(II) metal organic framework based on flexible o-phenylenediacetate and rigid 4,4′-azobis(pyridine) ligands: Synthesis, crystal structure and hydrogen gas adsorption property, Polyhedron, Volume 100, pp 108-113, 2015, DOI 10.1016/j.poly.2015.07.017

Özkan, C., Karaesmen, F., Özekici, S., A revenue management problem with a choice model of consumer behaviour in a random environment, OR Spectrum, Volume 37, pp 457-473, 2015, DOI 10.1007/s00291-014-0380-9

Kilinc, Y., Unal, U., Alaca, B.E., Residual stress gradients in electroplated nickel thin films, Microelectronic Engineering, Volume 134, pp 60-67, 2015, DOI 10.1016/j.mee.2015.01.042

Caglar, B., Yenilmez, B., Sozer, E.M., Modeling of post-filling stage in vacuum infusion using compaction characterization, Journal of Composite Materials, Volume 49, pp 1947-1960, 2015, DOI 10.1177/0021998314541305

Jouini, O., Akşin, O.Z., Karaesmen, F., Aguir, M.S., Dallery, Y., Call center delay announcement using a newsvendor-like performance criterion, Production and Operations Management, Volume 24, pp 587-604, 2015, DOI 10.1111/poms.12259

Yalcinkaya, M.A., Sarioglu, A., Sozer, E.M., A novel mold design for one-continuous permeability measurement of fiber preforms, Journal of Reinforced Plastics and Composites, Volume 34, pp 915-930, 2015, DOI 10.1177/0731684415581630

Dinc, E., Akan, O.B., More than the eye can see: Coherence time and coherence bandwidth of troposcatter links for mobile receivers, IEEE Vehicular Technology Magazine, Volume 10, pp 86-92, 2015, DOI 10.1109/MVT.2015.2410786

Dinc, E., Akan, O.B., A ray-based channel modeling approach for MIMO troposcatter beyond-Line-of-Sight (b-LoS) communications, IEEE Transactions on Communications, IEEE Transactions on Communications, Volume 63, pp 1690-1699, 2015, DOI 10.1109/TCOMM.2015.2416716

Tirkaz, C., Eisenstein, J., Sezgin, T., Yanikoglu, B., Identifying visual attributes for object recognition from text and taxonomy, Computer Vision and Image Understanding, Volume 137, 2015, DOI 10.1016/j.cviu.2015.02.006

Tekin, M., Özekici, S., Mean-Variance Newsvendor Model with Random Supply and Financial Hedging, IIE Transactions (Institute of Industrial Engineers), IIE Transactions (Institute of Industrial Engineers), Volume 47, pp 910-928, 2015, DOI 10.1080/0740817X.2014.981322

Oktenoglu, T., Erbulut, D.U., Kiapour, A., Ozer, A.F., Lazoglu, I., Kaner, T., Sasani, M., Goel, V.K., Pedicle screw-based posterior dynamic stabilisation of the lumbar spine: in vitro cadaver investigation and a finite element study, Computer Methods in Biomechanics and Biomedical Engineering, Volume 18, pp 1252-1261, 2015, DOI 10.1080/10255842.2014.890187

Bozbaʇ, S.E., Gümüşoʇlu, T., Yilmaztürk, S., Ayala, C.J., Aindow, M., Deligöz, H., Erkey, C., Electrochemical performance of fuel cell catalysts prepared by supercritical deposition: Effect of different precursor conversion routes, Journal of Supercritical Fluids, Volume 97, pp 154-164, 2015, DOI 10.1016/j.sup.u.2014.08.014

Cristal, A., Ozkan, B.K., Cohen, E., Kuru, I., Unsal, O., Tasiran, S., Mutluergil, S.O., Elmas, T., Verification tools for transactional programs, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Volume 8913, pp 283-306, 2015

Mahmutoglu, A.G., Demir, A., Analysis of Low-Frequency Noise in Switched MOSFET Circuits: Revisited and Clarified, IEEE Transactions on Circuits and Systems I: Regular Papers, Volume 62, pp 929-937, 2015, DOI 10.1109/TCSI.2015.2388834

Erdem, C., Bozkurt, Y., Erman, B., Gül, A., Demir, A., Mathematical modeling of Behçet’s disease: A dynamical systems approach, Journal of Biological Systems, Volume 23, pp 231-257, 2015, DOI 10.1142/S0218339015500126

Ayyildiz, M., Cinoglu, S., Basdogan, C., Effect of normal compression on the shear modulus of soft tissue in rheological measurements, Journal of the Mechanical Behavior of Biomedical Materials, Volume 49, pp 235-243, 2015, DOI 10.1016/j.jmbbm.2015.05.011

Zhang, H., Gönen, M., Yang, Z., Oja, E., Understanding emotional impact of images using Bayesian multiple kernel learning, Neurocomputing, Volume 165, 2015, DOI 10.1016/j.neucom.2014.10.093

Gidon, D., Aydin, D., Kizilel, S., Photocrosslinking of styrene-butadiene-styrene (SBS) networks formed by thiol-ene reactions and their influence on cell survival, Biomedical Materials (Bristol), Volume 10, 2015, DOI 10.1088/1748-6041/10/6/065001

Mamedov, A., Lazoglu, I., Micro ball-end milling of freeform titanium parts, Advances in Manufacturing, Volume 3, pp 263-268, 2015, DOI 10.1007/s40436-015-0123-4

Abbasi, N.A., Akan, O.B., A queueing-theoretical delay analysis for intra-body nervous nanonetwork, Nano Communication Networks, Volume 6, pp 166-177, 2015, DOI 10.1016/j.nancom.2015.08.002

Dalgicdir, C., Sayar, M., Conformation and Aggregation of LKα14 Peptide in Bulk Water and at the Air/Water Interface, Journal of Physical Chemistry B, Volume 119, pp 15164-15175, 2015, DOI 10.1021/acs.jpcb.5b08871

Boz, U., Basdogan, I., IIR filtering based adaptive active vibration control methodology with online secondary path modeling using PZT actuators, Smart Materials and Structures, Volume 24, 2015, DOI 10.1088/0964-1726/24/12/125001

Han, C.W., Iddir, H., Uzun, A., Curtiss, L.A., Browning, N.D., Gates, B.C., Ortalan, V., Migration of Single Iridium Atoms and Tri-iridium Clusters on MgO Surfaces: Aberration-Corrected STEM Imaging and Ab Initio Calculations, Journal of Physical Chemistry Letters, Volume 6, pp 4675-4679, 2015, DOI 10.1021/acs.jpclett.5b01884

Donmazov, S., Piskin, S., Pekkan, K., Noninvasive in vivo determination of residual strains and stresses, Journal of biomechanical Engineering, Volume 137, pp 061011-, 2015, DOI 10.1115/1.4030071

Aydin, D., Kizilel, R., Caniaz, R.O., Kizilel, S., Gelation-Stabilized Functional Composite-Modified Bitumen for Anti-icing Purposes, Industrial and Engineering Chemistry Research, Volume 54, pp 12587-12596, 2015, DOI 10.1021/acs.iecr.5b03028

Li, J.D., Spasojevic, M., Inan, U.S., Predicting conditions for the reception of one-hop signals from the Siple transmitter experiment using the Kp index, Journal of Geophysical Research A: Space Physics, Volume 120, pp 8440-8447, 2015, DOI 10.1002/2015JA021547

Dinc, E., Akan, O.B., Beyond-line-of-sight ducting channels: Coherence bandwidth, coherence time and rain attenuation, IEEE Communications Letters, Volume 19, pp 2274-2277, 2015, DOI 10.1109/LCOMM.2015.2482490

Gul, A., Bozkurt, Y., Demir, A., Erman, B., Unified modeling of Familial Mediterranean Fever and Cryopyrin Associated Periodic Syndromes, Pediatric Rheumatology, Volume 13, 2015, DOI 10.1186/1546-0096-13-S1-O43

Madan, C.E., Kucukyilmaz, A., Sezgin, T.M., Basdogan, C., Recognition of Haptic Interaction Patterns in Dyadic Joint Object Manipulation, IEEE Transactions on Haptics, Volume 8, pp 54-66, 2015, DOI 10.1109/TOH.2014.2384049

H., Bilgiç, B., Durmuş, H., Ertaş, M., Kotan, D., Akalın, M.A., Güllüoğlu, H., Zarifoğlu, M., Aysal, F., Döşoğlu, N., Bilguvar, K., Günel, M., Keskin, Ö, Akgün, T., Özçelik, H., Landers, J.E., Brown, R.H., Başak, A.N. et al, The distinct genetic pattern of ALS in Turkey and novel mutations, Neurobiology of aging, Volume 36, pp 1764.e9-18, 2015, DOI 10.1016/j.neurobiolaging.2014.12.032

Yilmaz, M., Esfahani, M.N., Bicer, M., Alaca, B.E., A numerical simulation for the stress effect in flexural micro/nano electromechanical resonators, Journal of Computational and Theoretical Nanoscience, Volume 12, pp 4399-4407, 2015, DOI 10.1166/jctn.2015.4374

Gidon, D., Aydin, D., Kizilel, S., Photocrosslinking of styrene-butadiene-styrene (SBS) networks formed by thiol-ene reactions and their influence on cell survival, Biomedical materials (Bristol, England), Volume 10, pp 065001-, 2015, DOI 10.1088/1748-6041/10/6/065001

Demir, S., Merve Çepni, H., Topcu, Y., Hołyńska, M., Keskin, S., A phytochemical-containing metal–organic framework: Synthesis, characterization and molecular simulations for hydrogen adsorption, Inorganica Chimica Acta, Volume 427, pp 138-143, 2015, DOI 10.1016/j.ica.2014.12.010

2014 Publications

Holmström, S.T.S., Baran, U., Urey, H., MEMS laser scanners: A review, Journal of Microelectromechanical Systems, Volume 23, pp 259-275, 2014, DOI 10.1109/JMEMS.2013.2295470

Altintas, Y., Kersting, P., Biermann, D., Budak, E., Denkena, B., Lazoglu, I., Virtual process systems for part machining operations, CIRP Annals – Manufacturing Technology, Volume 63, pp 585-605, 2014, DOI 10.1016/j.cirp.2014.05.007

Ulker, Z., Erkey, C., An emerging platform for drug delivery: Aerogel based systems, Journal of Controlled Release, Volume 177, pp 51-63, 2014, DOI 10.1016/j.jconrel.2013.12.033

Lahens, N.F., Kavakli, I.H., Zhang, R., Hayer, K., Black, M.B., Dueck, H., Pizarro, A., Kim, J., Irizarry, R., Thomas, R.S., Grant, G.R., Hogenesch, J.B., IVT-seq reveals extreme bias in RNA sequencing, Genome Biology, Volume 15, 2014, DOI 10.1186/gb-2014-15-6-r86

Uzun, A., Keskin, S., Site characteristics in metal organic frameworks for gas adsorption, Progress in Surface Science, Volume 89, pp 56-79, 2014, DOI 10.1016/j.progsurf.2013.11.001

Shah, G.A., Alagoz, F., Fadel, E.A., Akan, O.B., A spectrum-aware clustering for efficient multimedia routing in cognitive radio sensor networks, IEEE Transactions on Vehicular Technology, Volume 63, pp 3369-3380, 2014, DOI 10.1109/TVT.2014.2300141

Egilmez, H.E., Tekalp, A.M., Distributed QoS architectures for multimedia streaming over software defined networks, IEEE Transactions on Multimedia, Volume 16, pp 1597-1609, 2014, DOI 10.1109/TMM.2014.2325791

Sahillioʇlu, Y., Yemez, Y., Coarse-to-fine combinatorial matching for dense isometric shape correspondence, Computer Graphics Forum, Volume 30, pp 1461-1470, 2014, DOI 10.1111/j.1467-8659.2011.02020.x

Baspinar, A., Cukuroglu, E., Nussinov, R., Keskin, O., Gursoy, A., PRISM: A web server and repository for prediction of protein-protein interactions and modeling their 3D complexes, Nucleic Acids Research, Volume 42, pp W285-W289, 2014, DOI 10.1093/nar/gku397

Coleri Ergen, S., Tetikol, H.S., Kontik, M., Sevlian, R., Rajagopal, R., Varaiya, P., RSSI-fingerprinting-based mobile phone localization with route constraints, IEEE Transactions on Vehicular Technology, Volume 63, pp 423-428, 2014 DOI 10.1109/TVT.2013.2274646

Cukuroglu, E., Gursoy, A., Nussinov, R., Keskin, O., Non-redundant unique interface structures as templates for modeling protein interactions, PLoS ONE, Volume 9, 2014, DOI 10.1371/journal.pone.0086738

Acuner Ozbabacan, S.E., Gursoy, A., Nussinov, R., Keskin, O., The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer, PLoS Computational Biology, Volume 10, 2014, DOI 10.1371/journal.pcbi.1003470

Aridogan, U., Basdogan, I., Erturk, A., Analytical modeling and experimental validation of a structurally integrated piezoelectric energy harvester on a thin plate, Smart Materials and Structures, Volume 23, 2014, DOI 10.1088/0964-1726/23/4/045039

Anafi, R.C., Lee, Y., Sato, T.K., Venkataraman, A., Ramanathan, C., Kavakli, I.H., Hughes, M.E., Baggs, J.E., Growe, J., Liu, A.C., Kim, J., Hogenesch, J.B., Machine Learning Helps Identify CHRONO as a Circadian Clock Component, PLoS Biology, Volume 12, 2014, DOI 10.1371/journal.pbio.1001840

Kilinc, N., Cakmak, O., Kosemen, A., Ermek, E., Ozturk, S., Yerli, Y., Ozturk, Z.Z., Urey, H., Fabrication of 1D ZnO nanostructures on MEMS cantilever for VOC sensor application, Sensors and Actuators, B: Chemical, Volume 202, pp 357-364, 2014, DOI 10.1016/j.snb.2014.05.078

Caniaz, R.O., Erkey, C., Process intensification for heavy oil upgrading using supercritical water, Chemical Engineering Research and Design, Volume 92, pp 1845-1863, 2014, DOI 10.1016/j.cherd.2014.06.007

Cukuroglu, E., Engin, H.B., Gursoy, A., Keskin, O., Hot spots in protein-protein interfaces: Towards drug discovery, Progress in Biophysics and Molecular Biology, Volume 116, pp 165-173, 2014, DOI 10.1016/j.pbiomolbio.2014.06.003

Bal, T., Kepsutlu, B., Kizilel, S., Characterization of protein release from poly(ethylene glycol) hydrogels with crosslink density gradients, Journal of Biomedical Materials Research – Part A, Volume 102, pp 487-495, 2014, DOI 10.1002/jbm.a.34701

Nazli, C., Demirer, G.S., Yar, Y., Acar, H.Y., Kizilel, S., Targeted delivery of doxorubicin into tumor cells via MMP-sensitive PEG hydrogel-coated magnetic iron oxide nanoparticles (MIONPs), Colloids and Surfaces B: Biointerfaces, Volume 122, pp 674-683, 2014,  DOI 10.1016/j.colsurfb.2014.07.049

Yilmaz, G., Keskin, S., Molecular modeling of MOF and ZIF-filled MMMs for CO2/N2 separations, Journal of Membrane Science, Volume 454, pp 407-417, 2014, DOI 10.1016/j.memsci.2013.12.045

Shah, G.A., Akan, O.B., Performance analysis of CSMA-based opportunistic medium access protocol in cognitive radio sensor networks, Ad Hoc Networks, Volume 15, 2014, DOI 10.1016/j.adhoc.2013.03.014

Liang, C., Carlson, B., Lehtinen, N., Cohen, M., Marshall, R.A., Inan, U., Differing current and optical return stroke speeds in lightning, Geophysical Research Letters, Volume 41, pp 2561-2567, 2014, DOI 10.1002/2014GL059703

Engin, H.B., Gursoy, A., Nussinov, R., Keskin, O., Network-based strategies can help mono- and poly-pharmacology drug discovery: A systems biology view, Current Pharmaceutical Design, Volume 20, pp 1201-1207, 2014, DOI 10.2174/13816128113199990066

Acuner-Ozbabacan, E.S., Engin, B.H., Guven-Maiorov, E., Kuzu, G., Muratcioglu, S., Baspinar, A., Chen, Z., Van Waes, C., Gursoy, A., Keskin, O., Nussinov, R., The structural network of Interleukin-10 and its implications in inflammation and cancer, BMC Genomics, Volume 15, 2014, DOI 10.1186/1471-2164-15-S4-S2

Aksen, D., Kaya, O., Sibel Salman, F., Tüncel, Ö., An adaptive large neighborhood search algorithm for a selective and periodic inventory routing problem, European Journal of Operational Research, Volume 239, pp 413-426, 2014, DOI 10.1016/j.ejor.2014.05.043

Pellegrino, R., Kavakli, I.H., Goel, N., Cardinale, C.J., Dinges, D.F., Kuna, S.T., Maislin, G., Van Dongen, H.P.A., Tufik, S., Hogenesch, J.B., Hakonarson, H., Pack, A.I., A novel BHLHE41 variant is associated with short sleep and resistance to sleep deprivation in humans, Sleep, Volume 37, pp 1327-1336, 2014, DOI 10.5665/sleep.3924

Karaesmen, F., Özekici, S., Newsvendor model with random supply and financial hedging: Utility-based approach, International Journal of Production Economics, Volume 154, pp 178-189, 2014, DOI 10.1016/j.ijpe.2014.04.014

Malak, D., Akan, O.B., Communication theoretical understanding of intra-body nervous nanonetworks, IEEE Communications Magazine, Volume 52, pp 129-135, 2014, DOI 10.1109/MCOM.2014.6807957

Sadi, Y., Ergen, S.C., Park, P., Minimum energy data transmission for wireless networked control systems, IEEE Transactions on Wireless Communications, Volume 13, pp 2163-2175, 2014, DOI 10.1109/TWC.2014.0204.131204

Angi, A., Sanli, D., Erkey, C., Birer, O., Catalytic activity of copper (II) oxide prepared via ultrasound assisted Fenton-like reaction, Ultrasonics Sonochemistry, Volume 21, pp 854-859, 2014, DOI 10.1016/j.ultsonch.2013.09.006

Kuzu, G., Keskin, O., Nussinov, R., Gursoy, A., Modeling protein assemblies in the proteome, Molecular and Cellular Proteomics, Volume 13, pp 887-896, 2014, DOI 10.1074/mcp.M113.031294

Chen, C.-Y., Anẗon, R., Hung, M.-Y., Menon, P., Finol, E.A., Pekkan, K., Effects of intraluminal thrombus on patient-specific abdominal aortic aneurysm hemodynamics Via stereoscopic particle image velocity and computational fluid Dynamics Modeling, Journal of Biomechanical Engineering, Volume 136, 2014, DOI 10.1115/1.4026160

Okyay, H.K., Karaesmen, F., Özekici, S., Newsvendor models with dependent random supply and demand, Optimization Letters, Volume 8, pp 983-999, 2014, DOI 10.1007/s11590-013-0616-7

Erer, H., Yeşilel, O.Z., Arici, M., Keskin, S., Büyükgüngör, O., 2D→3D polycatenated and 3D→3D interpenetrated metal-organic frameworks constructed from thiophene-2,5-dicarboxylate and rigid bis(imidazole) ligands, Journal of Solid State Chemistry, Volume 210, pp 261-266, 2014, DOI 10.1016/j.jssc.2013.11.036

Kowalski, W.J., Teslovich, N.C., Menon, P.G., Tinney, J.P., Keller, B.B., Pekkan, K., Left atrial ligation alters intracardiac flow patterns and the biomechanical landscape in the chick embryo, Developmental Dynamics, Volume 243, pp 652-662, 2014, DOI 10.1002/dvdy.24107

Ozturk, T.N., Keskin, S., Computational screening of porous coordination networks for adsorption and membrane-based gas separations, Journal of Physical Chemistry C, Volume 118, pp 13988-13997, 2014.

Erucar, I., Manz, T.A., Keskin, S., Effects of electrostatic interactions on gas adsorption and permeability of MOF membranes, Molecular Simulation, Volume 40, pp 557-570, 2014, DOI 10.1080/08927022.2013.829219

Ammad-Ud-Din, M., Georgii, E., Gönen, M., Laitinen, T., Kallioniemi, O., Wennerberg, K., Poso, A., Kaski, S., Integrative and personalized QSAR analysis in cancer by kernelized Bayesian matrix factorization, Journal of Chemical Information and Modeling, Volume 54, pp 2347-2359, 2014, 10.1021/ci500152b

Guven-Maiorov, E., Acuner-Ozbabacan, S.E., Keskin, O., Gursoy, A., Nussinov, R., Structural pathways of cytokines may illuminate their roles in regulation of cancer development and immunotherapy, Cancers, Volume 6, pp 663-683, 2014, DOI 10.3390/cancers6020663

Demir, U., Bas, C.U., Ergen, S.C., Engine compartment UWB channel model for intravehicular wireless sensor networks, IEEE Transactions on Vehicular Technology, Volume 63, pp 2497-2505, 2014, DOI 10.1109/TVT.2013.2294357

Salman, F.S., Gül, S., Deployment of field hospitals in mass casualty incidents, Computers and Industrial Engineering, Volume 74, pp 37-51, 2014, DOI 10.1016/j.cie.2014.04.020

Dinc, E., Akan, O.B., Beyond-line-of-sight communications with ducting layer, IEEE Communications Magazine, Volume 52, pp 37-43, 2014, DOI 10.1109/MCOM.2014.6917399

Vaskan, P., Guillén-Gosálbez, G., Turkay, M., Jiménez, L., Multiobjective optimization of utility plants under several environmental indicators using an MILP-based dimensionality reduction approach, Industrial and Engineering Chemistry Research, Volume 53, pp 19559-19572, 2014, DOI 10.1021/ie5020074

Gonen, M., Kaski, S., Kernelized Bayesian Matrix Factorization, IEEE Transactions on Pattern Analysis and Machine Intelligence, Volume 36, pp 2047-2060, 2014, DOI 10.1109/TPAMI.2014.2313125

Yarpuzlu, B., Ayyildiz, M., Tok, O.E., Aktas, R.G., Basdogan, C., Correlation between the mechanical and histological properties of liver tissue, Journal of the Mechanical Behavior of Biomedical Materials, Volume 29, pp 403-416, 2014, DOI 10.1016/j.jmbbm.2013.09.016

Yap, C.H., Liu, X., Pekkan, K., Characterization of the vessel geometry, flow mechanics and wall shear stress in the great arteries of wildtype prenatal mouse., PloS one, Volume 9, 2014, DOI 10.1371/journal.pone.0086878

Toker, S.M., Canadinc, D., Taube, A., Gerstein, G., Maier, H.J., On the role of slip-twin interactions on the impact behavior of high-manganese austenitic steels, Materials Science and Engineering A, Volume 593, pp 120-126, 2014, DOI 10.1016/j.msea.2013.11.033

Örmeci, E.L., Salman, F.S., Yücel, E., Staff rostering in call centers providing employee transportation, Omega (United Kingdom), Volume 43, pp 41-53, 2014, DOI 10.1016/j.omega.2013.06.003

Örmeci, E.L., Salman, F.S., Yücel, E., Staff rostering in call centers providing employee transportation, Omega (United Kingdom), Volume 43, pp 41-53, 2014, DOI 10.1016/j.omega.2013.06.003

Toker, S.M., Canadinc, D., Maier, H.J., Birer, O., Evaluation of passive oxide layer formation-biocompatibility relationship in NiTi shape memory alloys: Geometry and body location dependency, Materials Science and Engineering C, Volume 36, pp 118-129, 2014, DOI 10.1016/j.msec.2013.11.040

Erbulut, D.U., Zafarparandeh, I., Lazoglu, I., Ozer, A.F., Application of an asymmetric finite element model of the C2-T1 cervical spine for evaluating the role of soft tissues in stability, Medical Engineering and Physics, Volume 36, pp 915-921, 2014, DOI 10.1016/j.medengphy.2014.02.020

Akçay, A., Balci, V., Uzun, A., Structural factors controlling thermal stability of imidazolium ionic liquids with 1-n-butyl-3-methylimidazolium cation on γ-Al 2O3, Thermochimica Acta, Volume 589, pp 131-136, DOI 10.1016/j.tca.2014.05.018

Muradoglu, M., Tryggvason, G., Simulations of soluble surfactants in 3D multiphase flow, Journal of Computational Physics, Volume 274, pp 737-757, 2014, DOI 10.1016/j.jcp.2014.06.024

Mengi, E., Yildirim, E.A., Kilic, M., Numerical optimization of eigenvalues of Hermitian matrix functions, SIAM Journal on Matrix Analysis and Applications, Volume 35, pp 699-724, 2014, DOI 10.1137/130933472

Sanli, D., Erkey, C., Demixing pressures of hydroxy-terminated poly(dimethylsiloxane)-carbon dioxide binary mixtures at 313.2 K, 323.2 K and 333.2 K, Journal of Supercritical Fluids, Volume 92, pp 264-271, 2014, DOI 10.1016/j.supflu.2014.05.014

Kowalski, W.J., Pekkan, K., Tinney, J.P., Keller, B.B., Investigating developmental cardiovascular biomechanics and the origins of congenital heart defects, Frontiers in Physiology, Volume 5, 2014, DOI 10.3389/fphys.2014.00408

Akşit, K., Niaki, A.H.G., Ulusoy, E., Urey, H., Super stereoscopy technique for comfortable and realistic 3D displays, Optics Letters, Volume 39, pp 6903-6906, 2014, DOI 10.1364/OL.39.006903

Aridogan, U., Basdogan, I., Erturk, A., Multiple patch-based broadband piezoelectric energy harvesting on plate-based structures, Journal of Intelligent Material Systems and Structures, Volume 25, pp 1664-1680, 2014, DOI 10.1177/1045389X14544152

Harid, V., Gołkowski, M., Bell, T., Inan, U.S., Theoretical and numerical analysis of radiation belt electron precipitation by coherent whistler mode waves, Journal of Geophysical Research: Space Physics, Volume 119, pp 4370-4388, 2014, DOI 10.1002/2014JA019809

Kuscu, M., Akan, O.B., Coverage and throughput analysis for FRET-based mobile molecular sensor/actor nanonetworks, Nano Communication Networks, Volume 5, pp 45-53, 2014, DOI 10.1016/j.nancom.2014.04.004

Li, J.D., Spasojevic, M., Harid, V., Cohen, M.B., Gołkowski, M., Inan, U., Analysis of magnetospheric ELF/VLF wave amplification from the Siple Transmitter experiment, Journal of Geophysical Research: Space Physics, Volume 119, pp 1837-1850, 2014, DOI 10.1002/2013JA019513

Erarslan, R.B., Adiyan, U., Lulec, S.Z., Olcer, S., Temiz, Y., Leblebici, Y., Torun, H., Urey, H., Design and characterization of micromachined sensor array integrated with CMOS based optical readout, Sensors and Actuators, A: Physical, Volume 215, pp 44-50, 2014, DOI 10.1016/j.sna.2013.10.014

Sahillioʇlu, Y., Yemez, Y., Partial 3-D correspondence from shape extremities, Computer Graphics Forum, Volume 33, pp 63-76, 2014, DOI 10.1111/cgf.12278

Fergani, O., Lazoglu, I., Mkaddem, A., El Mansori, M., Liang, S.Y., Analytical modeling of residual stress and the induced deflection of a milled thin plate, International Journal of Advanced Manufacturing Technology, Volume 75, pp 455-463, 2014, DOI 10.1007/s00170-014-6146-3

Blaes, P.R., Marshall, R.A., Inan, U.S., Return stroke speed of cloud-to-ground lightning estimated from elve hole radii, Geophysical Research Letters, Volume 41, pp 9182-9187, 2014, DOI 10.1002/2014GL062392

Toker, S.M., Canadinc, D., Evaluation of the biocompatibility of NiTi dental wires: A comparison of laboratory experiments and clinical conditions, Materials Science and Engineering C, Volume 40, pp 142-147, 2014, DOI 10.1016/j.msec.2014.03.060

Fattahi, A., Elaoud, S., Sadeqi Azer, E., Turkay, M., A novel integer programming formulation with logic cuts for the U-shaped assembly line balancing problem, International Journal of Production Research, Volume 52, pp 1318-1333, 2014, DOI 10.1080/00207543.2013.832489

Arici, M., Yeşilel, O.Z., Keskin, S., Şahin, O., Gas adsorption/separation properties of metal directed self-assembly of two coordination polymers with 5-nitroisophthalate, Journal of Solid State Chemistry, Volume 210, pp 280-286, 2014, DOI 10.1016/j.jssc.2013.11.010

Bomze, I.M., Gollowitzer, S., Yildirim, E.A., Rounding on the standard simplex: Regular grids for global optimization, Journal of Global Optimization, Volume 59, 243-258, 2014, DOI 10.1007/s10898-013-0126-2

Onal, O., Bal, B., Toker, S.M., Mirzajanzadeh, M., Canadinc, D., Maier, H.J., Microstructure-based modeling of the impact response of a biomedical niobium-zirconium alloy, Journal of Materials Research, Volume 29, pp 1123-1134, 2014, DOI 10.1557/jmr.2014.105

Lazoglu, I., Bugdayci, B., Thermal modelling of end milling, CIRP Annals – Manufacturing Technology, Volume 63, pp 113-116, 2014, DOI 10.1016/j.cirp.2014.03.072

Kanyas, S., Aydin, D., Kizilel, R., Demirel, A.L., Kizilel, S., Nanoparticle and gelation stabilized functional composites of an ionic salt in a hydrophobic polymer matrix, PLoS ONE, Volume 9, 2014, DOI 10.1371/journal.pone.0088125

Karabeyoglu, M.A., Nitrous oxide and oxygen mixtures (Nytrox) as oxidizers for rocket propulsion applications, Journal of Propulsion and Power, Volume 30, pp 696-706, 2014, DOI 10.2514/1.B34768

Zafarparandeh, I., Erbulut, D.U., Lazoglu, I., Ozer, A.F., Development of a finite element model of the human cervical spine, Turkish Neurosurgery, Volume 24, pp 312-318, 2014, DOI 10.5137/1019-5149.JTN.8486-13.0,

Sadi, Y., Ergen, S.C., Minimum length scheduling with packet traffic demands in wireless ad hoc networks, IEEE Transactions on Wireless Communications, Volume 13, pp 3738-3751, 2014, DOI 10.1109/TWC.2014.2318036

Kuscu, M., Akan, O.B., FRET-based nanoscale point-to-point and broadcast communications with multi-exciton transmission and channel routing, IEEE Transactions on Nanobioscience, Volume 13, pp 315-326, 2014, DOI 10.1109/TNB.2014.2342712

Harid, V., Gołkowski, M., Bell, T., Li, J.D., Inan, U.S., Finite difference modeling of coherent wave amplification in the Earth’s radiation belts, Geophysical Research Letters, Volume 41, pp 8193-8200, 2014, DOI 10.1002/2014GL061787

Harid, V., Gołkowski, M., Bell, T., Li, J.D., Inan, U.S., Finite difference modeling of coherent wave amplification in the Earth’s radiation belts, Geophysical Research Letters, Volume 41, pp 8193-8200, 2014, DOI 10.1002/2014GL061787

Lindsey, S.E., Menon, P.G., Kowalski, W.J., Shekhar, A., Yalcin, H.C., Nishimura, N., Schaffer, C.B., Butcher, J.T., Pekkan, K., Growth and hemodynamics after early embryonic aortic arch occlusion, Biomechanics and Modeling in Mechanobiology, Volume 14, pp 735-751, 2014, DOI 10.1007/s10237-014-0633-1

Sahillioʇlu, Y., Yemez, Y., Multiple Shape Correspondence by Dynamic Programming, Computer Graphics Forum, Volume 33, pp 121-130, 2014, DOI 10.1111/cgf.12480

Ulker, Z., Erkey, C., A novel hybrid material: An inorganic silica aerogel core encapsulated with a tunable organic alginate aerogel layer, RSC Advances, Volume 4, pp 62362-62366, 2014, DOI 10.1039/c4ra09089f

M.O., Yilmaz, Y., Demir, A., Kozat, S.S., The Krylov-proportionate normalized least mean fourth approach: Formulation and performance analysis, Signal Processing, Volume 109, 2014, DOI 10.1016/j.sigpro.2014.10.015

Kepsutlu, B., Nazli, C., Bal, T., Kizilel, S., Design of bioartificial pancreas with functional micro/nano-based encapsulation of islets, Current Pharmaceutical Biotechnology, Volume 15, pp 590-608, 2014

Erucar, I., Keskin, S., Molecular modeling of MOF-based mixed matrix membranes, Current Organic Chemistry, Volume 18, pp 2364-2380, 2014

Seferoglu, A.B., Koper, K., Can, F.B., Cevahir, G., Halil Kavakli, I., Enhanced heterotetrameric assembly of potato ADP-glucose pyrophosphorylase using reverse genetics, Plant and Cell Physiology, Volume 55, pp 1473-1483, 2014, DOI 10.1093/pcp/pcu078

Anadiotis, A.-C.G., Patrikakis, C.Z., Tekalp, A.M., Information-centric networking for multimedia, social and peer-to-peer communications, European Transactions on Telecommunications, Volume 25, pp 383-391, 2014, DOI 10.1002/ett.2814

Gönen, M., Coupled dimensionality reduction and classification for supervised and semi-supervised multilabel learning, Pattern Recognition Letters, Volume 38, pp 132-141, 2014, DOI 10.1016/j.patrec.2013.11.021

Ozkasap, O., Cem, E., Efsun Cebeci, S., Koc, T., Flat and hierarchical epidemics in P2P systems: Energy cost models and analysis, Future Generation Computer Systems, Volume 36, pp 257-266, 2014, DOI 10.1016/j.future.2013.09.009

Ayyildiz, M., Aktas, R.G., Basdogan, C., Effect of solution and post-mortem time on mechanical and histological properties of liver during cold preservation, Biorheology, Volume 51, pp 47-70, 2014, DOI 10.3233/BIR-14007

Kuscu, M., Akan, O.B., A,  A communication theoretical analysis of FRET-based mobile ad hoc molecular nanonetworks, IEEE Transactions on Nanobioscience, Volume 13, pp 255-266, 2014, DOI 10.1109/TNB.2014.2329178

Shahraki, N., Turkay, M., Analysis of interaction among land use, transportation network and air pollution using stochastic nonlinear programming, International Journal of Environmental Science and Technology, Volume 11, pp 2201-2216, 2014, DOI 10.1007/s13762-014-0566-3

Varol, O., Yuret, D., Erman, B., Kabakçioǧlu, A., Mode coupling points to functionally important residues in myosin II, Proteins: Structure, Function and Bioinformatics, Volume 82, pp 1777-1786,  2014, DOI 10.1002/prot.24531

Kaya, O., Bagci, F., Turkay, M., Planning of capacity, production and inventory decisions in a generic reverse supply chain under uncertain demand and returns, International Journal of Production Research, Volume 52, pp 270-282, 2014, DOI 10.1080/00207543.2013.838330

Manou, A., Economou, A., Karaesmen, F., Strategic customers in a transportation station when is it optimal to wait?, Operations Research, Volume 62, pp 910-925, 2014, DOI 10.1287/opre.2014.1280

Bulmuş, T., Özekici, S., Portfolio selection with hyperexponential utility functions, OR Spectrum, Volume 36, pp 73-93, 2014, DOI 10.1007/s00291-012-0307-2

Rudolf, G., Noyan, N., Giard, V., Modeling sequence scrambling and related phenomena in mixed-model production lines, European Journal of Operational Research, Volume 237, pp 177-195, 2014, DOI 10.1016/j.ejor.2014.02.041

Kontik, M., Ergen, S.C., Scheduling in single-hop multiple access wireless networks with successive interference cancellation, IEEE Wireless Communications Letters, Volume 3, pp 197-200, 2014, DOI 10.1109/WCL.2014.012114.130807

Yap, C.H., Liu, X., Pekkan, K., Characterizaton of the vessel geometry, flow mechanics and wall shear stress in the great arteries of wildtype prenatal Mouse, PLoS ONE, Volume 9, 2014, DOI 10.1371/journal.pone.0086878

Mokhtarpoor, R., Turkeri, H., Muradoglu, M., A new robust consistent hybrid finite-volume/particle method for solving the PDF model equations of turbulent reactive flows, Computers and Fluids, Volume 105, pp 39-57, 2014, DOI 10.1016/j.compfluid.2014.09.006

Kilinc, D., Akan, O.B., A theoretical modeling and analysis of communication via heat flow at nanoscale, IEEE Transactions on Communications, Volume 62, pp 3600-3609, 2014, DOI 10.1109/TCOMM.2014.2353047

Sildir, H., Arkun, Y., Ari, A., Dogan, I., Harmankaya, M., Economic model predictive control of an industrial fluid catalytic cracker, Industrial and Engineering Chemistry Research, Volume 53, pp 17696-17704, 2014, DOI 10.1021/ie502271r

Cakirlar, F.K., Samasti, M., Baris, I., Kavakli, H., Karakullukcu, A., Sirekbasan, S., Bagdatli, Y., The epidemiological and molecular characterization of vancomycin-resistant enterococci isolated from rectal swab samples of hospitalized patients in Turkey, Clinical Laboratory, Volume 60, pp 1807-1812, 2014, 10.7754/Clin.Lab.2014.131204

Turgay, Z., Karaesmen, F., Örmeci, E.L., A dynamic inventory rationing problem with uncertain demand and production rates, Annals of Operations Research, Volume 231, pp 207-228, 2014, DOI 10.1007/s10479-014-1573-y

Bayrak, C.S., Erman, B., Conformational transitions in the Ramachandran space of amino acids using the dynamic rotational isomeric state (DRIS) model, Molecular BioSystems, Volume 10, pp 663-671, 2014, DOI 10.1039/c3mb70433e

Akif Yalcinkaya, M., Sozer, E.M., Effect of part thickness variation on the mold filling time in vacuum infusion process, Journal of Reinforced Plastics and Composites, Volume 33, pp 2136-2150, 2014, doı 10.1177/0731684414554938

Galmes, S., Akan, O.B., Statistical analysis of array gain for cooperative MISO transmitters without CSI, IEEE Transactions on Wireless Communications, Volume 13, pp 1250-1263, 2014, DOI 10.1109/TWC.2014.011714.121745

Akşit, K., Niaki, A.H.G., Urey, H., Improved 3D with super stereoscopy technique, Digest of Technical Papers – SID International Symposium, Volume 45, pp 1067-1069, 2014, DOI 10.1002/j.2168-0159.2014.tb00277.x

Akşit, K., Olcer, S., Urey, H., Modular multi-projection multi-view autostereoscopic display using MEMS laser projectors, Digest of Technical Papers – SID International Symposium, Volume 45, pp 828-831, 2014, DOI 10.1002/j.2168-0159.2014.tb00218.x

Kepsutlu, B., Kizilel, R., Kizilel, S., Quantification of interactions among circadian clock proteins via surface plasmon resonance, Journal of Molecular Recognition, Volume 27, pp 458-469, 2014, DOI 10.1002/jmr.2367

Tan, B., Akçay, Y., Assortment-based cooperation between two make-to-stock firms, IIE Transactions (Institute of Industrial Engineers), Volume 46, pp 213-229, 2014, DOI 10.1080/0740817X.2013.814929

Gol’Berg, A., Gurvich, V., Andrade, D., Borys, K., Rudolf, G., Combinatorial games modeling seki in GO, Discrete Mathematics, Volume 329, pp 19-32, 2014, DOI 10.1016/j.disc.2014.04.005

Kandemir, M., Vetek, A., Gönen, M., Klami, A., Kaski, S., Multi-task and multi-view learning of user state, Neurocomputing, Volume 139, pp 97-106, 2014, DOI 10.1016/j.neucom.2014.02.057

Kocaoglu, M., Gulbahar, B., Akan, O.B., Stochastic resonance in graphene bilayer optical nanoreceivers, IEEE Transactions on Nanotechnology, Volume 13, pp 1107-1117, 2014, DOI 10.1109/TNANO.2014.2339294

Zoghzoghy, F.G., Cohen, M.B., Said, R.K., Basilico, S.S., Blakeslee, R.J., Inan, U.S., Lightning activity following the return stroke, Journal of Geophysical Research B: Solid Earth, Volume 119, pp 8329-8339, 2014, DOI 10.1002/2014JD021738

Zoghzoghy, F.G., Cohen, M.B., Said, R.K., Basilico, S.S., Blakeslee, R.J., Inan, U.S., Lightning activity following the return stroke, Journal of Geophysical Research B: Solid Earth, Volume 119, pp 8329-8339, 2014, DOI 10.1002/2014JD021738

Mutlu, E., Gajinov, V., Cristal, A., Tasiran, S., Unsal, O.S., Dynamic verification for hybrid concurrent programming models, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Volume 874, pp 156-161, 2014

Çekyay, B., Özekici, S., Optimal maintenance of semi-Markov missions, Probability in the Engineering and Informational Sciences, 29, pp 77-98, 2014, DOI 10.1017/S0269964814000229

Guler, H., Cambazoglu, B.B., Ozkasap, O., Task allocation in volunteer computing networks under monetary budget constraints, Peer-to-Peer Networking and Applications, Volume 8, pp 938-951, 2014,  DOI 10.1007/s12083-014-0301-3